Create a coloc_result object

Create a coloc_result object

Usage

new_coloc_result(
  coloc_abf = NULL,
  coloc_susie = NULL,
  coloc_signals = NULL,
  coloc_prop_test = NULL,
  n_snps = 0L,
  harmonised_data = data.frame(),
  methods_skipped = character(),
  params = list(),
  status = "success",
  status_reason = NULL,
  timing = numeric(0)
)

Arguments

coloc_abf

Output of coloc::coloc.abf(), or NULL.

coloc_susie

Output of coloc::coloc.susie(), or NULL.

coloc_signals

Output of coloc::coloc.signals(), or NULL.

coloc_prop_test

Output of colocPropTest::coloc.prop.test(), or NULL.

n_snps

Integer. Number of SNPs used in the analysis.

harmonised_data

Data frame of harmonised data used for analysis.

methods_skipped

Named character vector: names are method names, values are reasons for skipping.

params

List of all input parameters to run_coloc().

status

Character. One of "success", "no_snps_in_region", "too_few_snps", "no_harmonised_variants". Default "success".

status_reason

Character or NULL. Human-readable explanation when status != "success".

timing

Named numeric vector of elapsed times (seconds) for each major step inside run_coloc(). Empty by default.

Value

An object of class coloc_result.